Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs55866317 chr21:37020592 C/CA 2.29E-6 178 5.52 17.4 15.13 KM Plot
PAAD rs55879775 chr1:33742353 C/T 5.48E-6 170 4.92 16.1 15.5 KM Plot
PAAD rs55901407 chr5:94606287 A/G 9.68E-5 170 2.18 17.5 14.67 KM Plot
PAAD rs55909826 chr21:43918253 C/A 0.000116 172 16.48 13.13 7.87 KM Plot
PAAD rs55912899 chr21:48104004 A/G 3.84E-5 171 7.47 15.62 15.42 KM Plot
PAAD rs55943779 chr19:49364396 C/T 5.22E-13 178 16.28 12.6 1.37 KM Plot
PAAD rs55951843 chr7:6172267 G/A 0 176 15.53 14.88 1.03 KM Plot
PAAD rs55966338 chr19:33452354 G/A 4.03E-5 175 15.53 13.58 4.83 KM Plot
PAAD rs55966626 chr19:49342396 G/T 7.92E-13 176 16.17 12.87 1.37 KM Plot
PAAD rs55973465 chr19:49369154 C/T 1.09E-12 175 16.28 12.87 1.37 KM Plot
PAAD rs55973507 chr7:20657009 T/G 1.81E-6 178 15.53 15.57 3.67 KM Plot
PAAD rs55983014 chr19:33453821 T/C 1.4E-9 175 15.55 13.58 2.2 KM Plot
PAAD rs55983359 chr1:26336907 C/T 1.18E-7 175 15.72 13.93 3.17 KM Plot
PAAD rs55987357 chr21:37020593 C/CG 2.29E-6 178 5.52 17.4 15.13 KM Plot
PAAD rs56021835 chr19:49369989 G/A 7.3E-13 176 16.28 12.6 1.37 KM Plot